Detailed information of SNP:
|
SNP ID:
sf0823908789(Gbrowse)
Chromosome: chr08 Position: 23908789 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 93.97% | 6.03% |
| All Indica | 774 | 99.87% | 0.13% |
| All Japonica | 479 | 83.30% | 16.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 319 | 76.49% | 23.51% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823908789 | G->A | INTERGENIC | None |