Detailed information of SNP:
|
SNP ID:
sf0823964739(Gbrowse)
Chromosome: chr08 Position: 23964739 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 96.51% | 3.49% |
| All Indica | 771 | 99.87% | 0.13% |
| All Japonica | 484 | 90.29% | 9.71% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 362 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 99.50% | 0.50% |
| Temperate Japonica | 326 | 85.58% | 14.42% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823964739 | C->T | INTERGENIC | None |