Detailed information of SNP:
|
SNP ID:
sf0823997428(Gbrowse)
Chromosome: chr08 Position: 23997428 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1257 | 96.34% | 3.66% |
| All Indica | 705 | 100.00% | 0.00% |
| All Japonica | 435 | 89.43% | 10.57% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 328 | 100.00% | 0.00% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 181 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 84.19% | 15.81% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823997428 | C->A | LOC_Os08g37890(LOC_Os08g37890.1) | UTR_3_PRIME |