Detailed information of SNP:
|
SNP ID:
sf0824004999(Gbrowse)
Chromosome: chr08 Position: 24004999 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 96.55% | 3.45% |
| All Indica | 787 | 93.90% | 6.10% |
| All Japonica | 483 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 90.30% | 9.70% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 327 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824004999 | C->T | LOC_Os08g37904(LOC_Os08g37904.4) | INTRON |
| sf0824004999 | C->T | LOC_Os08g37904(LOC_Os08g37904.2) | INTRON |
| sf0824004999 | C->T | LOC_Os08g37904(LOC_Os08g37904.3) | INTRON |
| sf0824004999 | C->T | LOC_Os08g37904(LOC_Os08g37904.6) | INTRON |
| sf0824004999 | C->T | LOC_Os08g37904(LOC_Os08g37904.1) | INTRON |
| sf0824004999 | C->T | LOC_Os08g37904(LOC_Os08g37904.5) | INTRON |