Detailed information of SNP:
|
SNP ID:
sf0824027577(Gbrowse)
Chromosome: chr08 Position: 24027577 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1305 | 91.57% | 8.43% |
| All Indica | 690 | 84.20% | 15.80% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 310 | 75.81% | 24.19% |
| Indica II | 195 | 100.00% | 0.00% |
| Indica Intermediate | 185 | 81.62% | 18.38% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824027577 | C->T | INTERGENIC | None |