Detailed information of SNP:
|
SNP ID:
sf0824101634(Gbrowse)
Chromosome: chr08 Position: 24101634 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 89.01% | 10.99% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 434 | 71.43% | 28.57% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 290 | 70.69% | 29.31% |
| Tropical Japonica | 82 | 57.32% | 42.68% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824101634 | G->A | LOC_Os08g38040(LOC_Os08g38040.1) | INTRON |