Detailed information of SNP:
|
SNP ID:
sf0824105296(Gbrowse)
Chromosome: chr08 Position: 24105296 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 92.45% | 7.55% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824105296 | A->G | LOC_Os08g38050(LOC_Os08g38050.1) | Non-Synonymous SNP |