Detailed information of SNP:
|
SNP ID:
sf0824159684(Gbrowse)
Chromosome: chr08 Position: 24159684 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1319 | 96.59% | 3.41% |
| All Indica | 729 | 93.96% | 6.04% |
| All Japonica | 469 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 89.64% | 10.36% |
| Indica II | 201 | 99.00% | 1.00% |
| Indica Intermediate | 190 | 96.32% | 3.68% |
| Temperate Japonica | 322 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824159684 | A->G | LOC_Os08g38150(LOC_Os08g38150.1) | INTRON |