Detailed information of SNP:
|
SNP ID:
sf0824218573(Gbrowse)
Chromosome: chr08 Position: 24218573 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.93% | 22.07% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 46.68% | 53.32% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824218573 | C->T | INTERGENIC | None |