Detailed information of SNP:
|
SNP ID:
sf0824238162(Gbrowse)
Chromosome: chr08 Position: 24238162 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 76.74% | 23.26% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 434 | 64.29% | 35.71% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 279 | 74.91% | 25.09% |
| Tropical Japonica | 90 | 38.89% | 61.11% |
| Japonica Intermediate | 65 | 53.85% | 46.15% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824238162 | A->G | LOC_Os08g38240(LOC_Os08g38240.1) | Synonymous |