Detailed information of SNP:
|
SNP ID:
sf0824282128(Gbrowse)
Chromosome: chr08 Position: 24282128 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1195 | 89.54% | 10.46% |
| All Indica | 693 | 99.71% | 0.29% |
| All Japonica | 391 | 73.91% | 26.09% |
| Aus | 61 | 72.13% | 27.87% |
| Indica I | 311 | 99.36% | 0.64% |
| Indica II | 194 | 100.00% | 0.00% |
| Indica Intermediate | 188 | 100.00% | 0.00% |
| Temperate Japonica | 261 | 80.08% | 19.92% |
| Tropical Japonica | 72 | 50.00% | 50.00% |
| Japonica Intermediate | 58 | 75.86% | 24.14% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824282128 | C->G | INTERGENIC | None |