Detailed information of SNP:
|
SNP ID:
sf0824319821(Gbrowse)
Chromosome: chr08 Position: 24319821 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 94.12% | 5.88% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 457 | 83.15% | 16.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 300 | 75.33% | 24.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824319821 | T->C | INTERGENIC | None |