Detailed information of SNP:
|
SNP ID:
sf0824362496(Gbrowse)
Chromosome: chr08 Position: 24362496 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 89.85% | 10.15% |
| All Indica | 787 | 98.73% | 1.27% |
| All Japonica | 483 | 82.40% | 17.60% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 370 | 99.73% | 0.27% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 325 | 89.54% | 10.46% |
| Tropical Japonica | 91 | 54.95% | 45.05% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824362496 | C->T | INTERGENIC | None |