Detailed information of SNP:
|
SNP ID:
sf0824390955(Gbrowse)
Chromosome: chr08 Position: 24390955 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1288 | 85.56% | 14.44% |
| All Indica | 739 | 96.89% | 3.11% |
| All Japonica | 429 | 76.92% | 23.08% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 343 | 99.71% | 0.29% |
| Indica II | 197 | 89.85% | 10.15% |
| Indica Intermediate | 199 | 98.99% | 1.01% |
| Temperate Japonica | 287 | 89.20% | 10.80% |
| Tropical Japonica | 81 | 27.16% | 72.84% |
| Japonica Intermediate | 61 | 85.25% | 14.75% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824390955 | A->G | LOC_Os08g38590(LOC_Os08g38590.1) | INTRON |