Detailed information of SNP:
|
SNP ID:
sf0824410733(Gbrowse)
Chromosome: chr08 Position: 24410733 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 95.82% | 4.18% |
| All Indica | 793 | 100.00% | 0.00% |
| All Japonica | 433 | 87.53% | 12.47% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 82.01% | 17.99% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824410733 | T->C | INTERGENIC | None |