Detailed information of SNP:
|
SNP ID:
sf0824472312(Gbrowse)
Chromosome: chr08 Position: 24472312 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 84.90% | 15.10% |
| All Indica | 798 | 87.59% | 12.41% |
| All Japonica | 497 | 79.68% | 20.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824472312 | G->A | INTERGENIC | None |