Detailed information of SNP:
|
SNP ID:
sf0824503751(Gbrowse)
Chromosome: chr08 Position: 24503751 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.93% | 6.07% |
| All Indica | 796 | 90.58% | 9.42% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824503751 | G->A | LOC_Os08g38760(LOC_Os08g38760.1) | INTRON |