Detailed information of SNP:
|
SNP ID:
sf0824521504(Gbrowse)
Chromosome: chr08 Position: 24521504 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 71.27% | 28.73% |
| All Indica | 798 | 86.59% | 13.41% |
| All Japonica | 461 | 39.91% | 60.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 305 | 23.61% | 76.39% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 65 | 52.31% | 47.69% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824521504 | C->T | INTERGENIC | None |