Detailed information of SNP:
|
SNP ID:
sf0824557482(Gbrowse)
Chromosome: chr08 Position: 24557482 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 92.66% | 7.34% |
| All Indica | 761 | 86.99% | 13.01% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 349 | 77.36% | 22.64% |
| Indica II | 206 | 98.06% | 1.94% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824557482 | C->G | INTERGENIC | None |