Detailed information of SNP:
|
SNP ID:
sf0824558287(Gbrowse)
Chromosome: chr08 Position: 24558287 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 95.27% | 4.73% |
| All Indica | 797 | 96.49% | 3.51% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824558287 | G->T | LOC_Os08g38850(LOC_Os08g38850.1) | UTR_5_PRIME |