Detailed information of SNP:
|
SNP ID:
sf0824562029(Gbrowse)
Chromosome: chr08 Position: 24562029 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 78.22% | 21.78% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 483 | 41.61% | 58.39% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 323 | 17.65% | 82.35% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824562029 | A->T | LOC_Os08g38850(LOC_Os08g38850.1) | Non-Synonymous SNP |
| sf0824562029 | A->T | LOC_Os08g38850(LOC_Os08g38850.2) | Non-Synonymous SNP |