Detailed information of SNP:
|
SNP ID:
sf0824568355(Gbrowse)
Chromosome: chr08 Position: 24568355 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 96.72% | 3.28% |
| All Indica | 754 | 94.03% | 5.97% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 97.81% | 2.19% |
| Indica II | 191 | 90.58% | 9.42% |
| Indica Intermediate | 198 | 90.40% | 9.60% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824568355 | C->T | INTERGENIC | None |