Detailed information of SNP:
|
SNP ID:
sf0824709485(Gbrowse)
Chromosome: chr08 Position: 24709485 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1286 | 95.96% | 4.04% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 366 | 86.34% | 13.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 209 | 78.47% | 21.53% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824709485 | G->A | INTERGENIC | None |