Detailed information of SNP:
|
SNP ID:
sf0824720180(Gbrowse)
Chromosome: chr08 Position: 24720180 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.73% | 6.27% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824720180 | C->T | LOC_Os08g39140(LOC_Os08g39140.1) | INTRON |
| sf0824720180 | C->T | LOC_Os08g39140(LOC_Os08g39140.2) | INTRON |
| sf0824720180 | C->T | LOC_Os08g39140(LOC_Os08g39140.4) | INTRON |
| sf0824720180 | C->T | LOC_Os08g39140(LOC_Os08g39140.3) | UTR_5_PRIME |