Detailed information of SNP:
|
SNP ID:
sf0824766976(Gbrowse)
Chromosome: chr08 Position: 24766976 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 83.12% | 16.88% |
| All Indica | 727 | 69.60% | 30.40% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 68.26% | 31.74% |
| Indica II | 191 | 59.16% | 40.84% |
| Indica Intermediate | 202 | 81.68% | 18.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824766976 | A->G | LOC_Os08g39210(LOC_Os08g39210.1) | INTRON |