Detailed information of SNP:
|
SNP ID:
sf0824782581(Gbrowse)
Chromosome: chr08 Position: 24782581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1259 | 93.01% | 6.99% |
| All Indica | 663 | 86.88% | 13.12% |
| All Japonica | 477 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 299 | 78.93% | 21.07% |
| Indica II | 180 | 95.00% | 5.00% |
| Indica Intermediate | 184 | 91.85% | 8.15% |
| Temperate Japonica | 316 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824782581 | C->T | LOC_Os08g39240(LOC_Os08g39240.1) | Non-Synonymous SNP |
| sf0824782581 | C->T | LOC_Os08g39240(LOC_Os08g39240.2) | Non-Synonymous SNP |