Detailed information of SNP:
|
SNP ID:
sf0824810315(Gbrowse)
Chromosome: chr08 Position: 24810315 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 94.74% | 5.26% |
| All Indica | 774 | 91.09% | 8.91% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 93.09% | 6.91% |
| Indica II | 209 | 85.17% | 14.83% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 328 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824810315 | G->C | LOC_Os08g39260(LOC_Os08g39260.1) | Non-Synonymous SNP |