Detailed information of SNP:
|
SNP ID:
sf0824844997(Gbrowse)
Chromosome: chr08 Position: 24844997 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 82.94% | 17.06% |
| All Indica | 701 | 69.19% | 30.81% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 323 | 69.97% | 30.03% |
| Indica II | 183 | 52.46% | 47.54% |
| Indica Intermediate | 195 | 83.59% | 16.41% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824844997 | C->T | INTERGENIC | None |