Detailed information of SNP:
|
SNP ID:
sf0824846270(Gbrowse)
Chromosome: chr08 Position: 24846270 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 85.67% | 14.33% |
| All Indica | 705 | 74.04% | 25.96% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 322 | 77.64% | 22.36% |
| Indica II | 183 | 55.74% | 44.26% |
| Indica Intermediate | 200 | 85.00% | 15.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824846270 | G->T | INTERGENIC | None |