Detailed information of SNP:
|
SNP ID:
sf0824866710(Gbrowse)
Chromosome: chr08 Position: 24866710 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.70% | 6.30% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 492 | 86.18% | 13.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 91 | 51.65% | 48.35% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824866710 | G->A | LOC_Os08g39350(LOC_Os08g39350.1) | INTRON |