Detailed information of SNP:
|
SNP ID:
sf0824880758(Gbrowse)
Chromosome: chr08 Position: 24880758 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 79.24% | 20.76% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 431 | 71.23% | 28.77% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 298 | 91.28% | 8.72% |
| Tropical Japonica | 72 | 20.83% | 79.17% |
| Japonica Intermediate | 61 | 32.79% | 67.21% |
| Group VI/Aromatic | 7 | 0.00% | 100.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824880758 | T->G | LOC_Os08g39370(LOC_Os08g39370.1) | Non-Synonymous SNP |