Detailed information of SNP:
|
SNP ID:
sf0824898888(Gbrowse)
Chromosome: chr08 Position: 24898888 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 94.18% | 5.82% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 454 | 83.04% | 16.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 76.69% | 23.31% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824898888 | G->C | INTERGENIC | None |