Detailed information of SNP:
|
SNP ID:
sf0824948990(Gbrowse)
Chromosome: chr08 Position: 24948990 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 80.38% | 19.62% |
| All Indica | 797 | 73.40% | 26.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 69.25% | 30.75% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0824948990 | T->C | INTERGENIC | None |