Detailed information of SNP:
|
SNP ID:
sf0825011633(Gbrowse)
Chromosome: chr08 Position: 25011633 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 74.79% | 25.21% |
| All Indica | 790 | 64.05% | 35.95% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 67.47% | 32.53% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 206 | 59.22% | 40.78% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825011633 | T->C | INTERGENIC | None |