Detailed information of SNP:
|
SNP ID:
sf0825036256(Gbrowse)
Chromosome: chr08 Position: 25036256 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 79.77% | 20.23% |
| All Indica | 799 | 72.59% | 27.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825036256 | T->C | LOC_Os08g39570(LOC_Os08g39570.1) | UTR_3_PRIME |