Detailed information of SNP:



SNP ID: sf0825047949(Gbrowse)

Chromosome: chr08

Position: 25047949
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 89.64% 10.36%
All Indica799 89.99% 10.01%
All Japonica497 100.00% 0.00%
Aus67 8.96% 91.04%
Indica I375 94.40% 5.60%
Indica II213 97.65% 2.35%
Indica Intermediate211 74.41% 25.59%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0825047949 C->T INTERGENIC None