Detailed information of SNP:
|
SNP ID:
sf0825055856(Gbrowse)
Chromosome: chr08 Position: 25055856 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 97.01% | 2.99% |
| All Indica | 778 | 99.87% | 0.13% |
| All Japonica | 476 | 91.60% | 8.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 324 | 87.96% | 12.04% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825055856 | G->A | INTERGENIC | None |