Detailed information of SNP:
|
SNP ID:
sf0825065750(Gbrowse)
Chromosome: chr08 Position: 25065750 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 61.80% | 38.20% |
| All Indica | 793 | 37.58% | 62.42% |
| All Japonica | 487 | 94.46% | 5.54% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 35.03% | 64.97% |
| Indica II | 209 | 30.14% | 69.86% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 330 | 93.94% | 6.06% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825065750 | G->A | INTERGENIC | None |