Detailed information of SNP:
|
SNP ID:
sf0825084732(Gbrowse)
Chromosome: chr08 Position: 25084732 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 64.11% | 35.89% |
| All Indica | 795 | 38.99% | 61.01% |
| All Japonica | 493 | 98.38% | 1.62% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 36.90% | 63.10% |
| Indica II | 210 | 30.95% | 69.05% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825084732 | G->T | INTERGENIC | None |