Detailed information of SNP:
|
SNP ID:
sf0825086155(Gbrowse)
Chromosome: chr08 Position: 25086155 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1230 | 93.66% | 6.34% |
| All Indica | 780 | 99.87% | 0.13% |
| All Japonica | 336 | 77.08% | 22.92% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 227 | 67.84% | 32.16% |
| Tropical Japonica | 61 | 100.00% | 0.00% |
| Japonica Intermediate | 48 | 91.67% | 8.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825086155 | A->G | INTERGENIC | None |