Detailed information of SNP:
|
SNP ID:
sf0825096524(Gbrowse)
Chromosome: chr08 Position: 25096524 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 90.30% | 9.70% |
| All Indica | 790 | 88.61% | 11.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 50 | 18.00% | 82.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 203 | 76.85% | 23.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825096524 | G->A | INTERGENIC | None |