Detailed information of SNP:
|
SNP ID:
sf0825115986(Gbrowse)
Chromosome: chr08 Position: 25115986 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 77.02% | 22.98% |
| All Indica | 795 | 67.55% | 32.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 70.05% | 29.95% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825115986 | T->C | LOC_Os08g39680(LOC_Os08g39680.1) | INTRON |