Detailed information of SNP:
|
SNP ID:
sf0825148525(Gbrowse)
Chromosome: chr08 Position: 25148525 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1243 | 82.46% | 17.54% |
| All Indica | 687 | 69.00% | 31.00% |
| All Japonica | 441 | 99.77% | 0.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 319 | 69.59% | 30.41% |
| Indica II | 181 | 57.46% | 42.54% |
| Indica Intermediate | 187 | 79.14% | 20.86% |
| Temperate Japonica | 298 | 99.66% | 0.34% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 88.24% | 11.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825148525 | C->A | INTERGENIC | None |