Detailed information of SNP:
|
SNP ID:
sf0825172899(Gbrowse)
Chromosome: chr08 Position: 25172899 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 82.64% | 17.36% |
| All Indica | 792 | 78.54% | 21.46% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 370 | 90.81% | 9.19% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 209 | 60.29% | 39.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825172899 | T->C | LOC_Os08g39760(LOC_Os08g39760.1) | INTRON |