Detailed information of SNP:



SNP ID: sf0825172899(Gbrowse)

Chromosome: chr08

Position: 25172899
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1411 82.64% 17.36%
All Indica792 78.54% 21.46%
All Japonica497 98.99% 1.01%
Aus67 5.97% 94.03%
Indica I370 90.81% 9.19%
Indica II213 75.12% 24.88%
Indica Intermediate209 60.29% 39.71%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 82.93% 17.07%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0825172899 T->C LOC_Os08g39760(LOC_Os08g39760.1) INTRON