Detailed information of SNP:
|
SNP ID:
sf0825175618(Gbrowse)
Chromosome: chr08 Position: 25175618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.35% | 6.65% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825175618 | C->T | LOC_Os08g39760(LOC_Os08g39760.1) | Non-Synonymous SNP |