Detailed information of SNP:
|
SNP ID:
sf0825178032(Gbrowse)
Chromosome: chr08 Position: 25178032 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 82.29% | 17.71% |
| All Indica | 770 | 77.27% | 22.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 350 | 90.86% | 9.14% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 209 | 59.81% | 40.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825178032 | T->C | INTERGENIC | None |