Detailed information of SNP:
|
SNP ID:
sf0825192096(Gbrowse)
Chromosome: chr08 Position: 25192096 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 75.39% | 24.61% |
| All Indica | 791 | 66.37% | 33.63% |
| All Japonica | 488 | 98.77% | 1.23% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 371 | 67.92% | 32.08% |
| Indica II | 210 | 72.38% | 27.62% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 329 | 98.78% | 1.22% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825192096 | T->C | LOC_Os08g39810(LOC_Os08g39810.1) | Non-Synonymous SNP |