Detailed information of SNP:
|
SNP ID:
sf0825193609(Gbrowse)
Chromosome: chr08 Position: 25193609 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 74.77% | 25.23% |
| All Indica | 799 | 63.33% | 36.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825193609 | A->G | LOC_Os08g39810(LOC_Os08g39810.1) | Synonymous |