Detailed information of SNP:
|
SNP ID:
sf0825211156(Gbrowse)
Chromosome: chr08 Position: 25211156 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.23% | 6.77% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825211156 | G->A | LOC_Os08g39830(LOC_Os08g39830.2) | Non-Synonymous SNP |
| sf0825211156 | G->A | LOC_Os08g39830(LOC_Os08g39830.1) | Non-Synonymous SNP |