Detailed information of SNP:
|
SNP ID:
sf0825214598(Gbrowse)
Chromosome: chr08 Position: 25214598 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 77.95% | 22.05% |
| All Indica | 786 | 69.47% | 30.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 371 | 72.24% | 27.76% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 202 | 60.40% | 39.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825214598 | T->G | LOC_Os08g39840(LOC_Os08g39840.1) | Non-Synonymous SNP |